/*
utilsBBSel:  brief Definition of utils structures for backbones-selector project.
    Copyright (C) 2011  Jorge E. A. Atala
                        FuDePAN
    This file is part of the Backbones-Selector Proyect.

    Backbones-Selector is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    Backbones-Selector is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with Backbones-Selector.  If not, see <http://www.gnu.org/licenses/>.
*/

#ifndef UTILS_BBSEL_H
#define UTILS_BBSEL_H
#ifndef MILI_NAMESPACE
#   define MILI_NAMESPACE
#endif
#include <mili/mili.h>
#include <biopp/biopp.h>
using namespace biopp;

namespace backbonesSelector
{

typedef Aminoacid_Standard_Alphabet<> AminoacidStd;

typedef unsigned int AlphaCarbon;

class BBSelectorExceptionHierarchy {};

typedef GenericException<BBSelectorExceptionHierarchy> BBSelectorException;

DEFINE_SPECIFIC_EXCEPTION_TEXT(AminoacidNotFound,
                               BBSelectorExceptionHierarchy,
                               "The aminoacid is not defined in the EnergyTable.");
}
#endif
